Calculating the Transition Matrix

Once you have calculated the eigenvalues for one or more potential function, the transition matrix is easily calculated. From the ‘Graph’ menu, choose ‘New Transition Matrix’. A window will appear that instructs you to click on the graph window of two graphs to specify for which graphs the matrix should be calculated.

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Clicking on the same graph twice will calculate the transition matrix for transitions within a single potential function. Once two graphs have been selected, a new window will appear showing the transition matrix.

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